ProCKSI

= Datasets =

How to label datasets
Datasets are labeled in the following way: {{{
DatasetName.tgz
DatasetName_Literature.tgz
DatasetName_NumberOfChains_Extraction.tgz
}}}

whereas: || '''!DatasetName''' || Authors or web that site proposed the dataset || '''Literature''' || Special name given in the literatur || '''!NumberOfChains''' || Number of (extracted) chains contained in the dataset || '''Extraction''' || Extraction of the models/chains: ''none'', ''first-first'', ''first-all'', ''all-all''

Available Datasets
The following datasets are available from the repository (special privileges required!): || '''!DatasetName''' || '''Extraction''' || '''!NumberOfChains''' || '''Size in MB''' || '''Link''' || !LelukKoniecznyRoterman || - || - || 3.5 || [source:Datasets/LelukKoniecznyRoterman.tgz Download] || || first-first || 6 || 0.4 || [source:Datasets/LelukKoniecznyRoterman_6_first-first.tgz Download] || || first-all || 15 || 0.9 || [source:Datasets/LelukKoniecznyRoterman_15_first-all.tgz Download] || '''!DatasetName''' || '''Extraction''' || '''!NumberOfChains''' || '''Size in MB''' || '''Link''' || !ChewKedem || - || - || 3.8 || [source:Datasets/ChewKedem.tgz Download] || || first-first || 34 || 1.3 || [source:Datasets/ChewKedem_34_first-first.tgz Download] || || first-all || 54 || 2.0 || [source:Datasets/ChewKedem_54_first-all.tgz Download] || || all-all || 132 || 4.1 || [source:Datasets/ChewKedem_132_all-all.tgz Download] || '''!DatasetName''' || '''Extraction''' || '''!NumberOfChains''' || '''Size in MB''' || '''Link''' || !ProteinKinaseResource || - || - || 3.6 || [source:Datasets/ProteinKinaseResource.tgz Download] || || first-first || 45 || 2.4 || [source:Datasets/ProteinKinaseResource_45_first-first.tgz Download] || || first-all || 49 || 2.5 || [source:Datasets/ProteinKinaseResource_49_first-all.tgz Download] || || all-all || 106 || 4.0 || [source:Datasets/ProteinKinaseResource_106_all-all.tgz Download] || '''!DatasetName''' || '''Extraction''' || '''!NumberOfChains''' || '''Size in MB''' || '''Link''' || Skolnick || - || - || 5.1 || [source:Datasets/Skolnick.tgz Download] || || first-first || 33 || 1.1 || [source:Datasets/Skolnick_33_first-first.tgz Download] || || first-all || 65 || 2.1 || [source:Datasets/Skolnick_65_first-all.tgz Download] || || all-all || 179 || 5.9 || [source:Datasets/Skolnick_179_all-all.tgz Download] || '''!DatasetName''' || '''Extraction''' || '''!NumberOfChains''' || '''Size in MB''' || '''Link''' || !RostSander || - || - || 7.4 || [source:Datasets/RostSander.tgz Download] || || RS126 || 126 || 4.3 || [source:Datasets/RostSander_RS126.tgz Download] || || first-first || 119 || 4.4 || [source:Datasets/RostSander_119_first-first.tgz Download] || || first-all || 212 || 7.6 || [source:Datasets/RostSander_212_first-all.tgz Download] || '''!DatasetName''' || '''Extraction''' || '''!NumberOfChains''' || '''Size in MB''' || '''Link''' || !KinjoHorimotoNishikawa || - || - || 98 || [source:Datasets/KinjoHorimotoNishikawa.tgz Download] || || first-first || 1012 || 46 || [source:Datasets/KinjoHorimotoNishikawa_1012_first-first.tgz Download] || || first-all || 2013 || 88 || [source:Datasets/KinjoHorimotoNishikawa_2013_first-all.tgz Download] || '''!DatasetName''' || '''Description''' || '''Extraction type''' || '''!NumberOfChains''' || '''Size in MB''' || '''Link''' || Shah1 || Randomly selected 1000 proteins from PDB || - || - || 114 || [source:Datasets/Shah.tgz Download] || || || first-first || 1000 || 41 || [source:Datasets/Shah_1000_first-first.tgz Download] || || || first-all || 1943 || 80 || [source:Datasets/Shah_1943_first-all.tgz Download] || || || all-all || 4007 || 124 || [source:Datasets/Shah_4007_all-all.tgz Download] || '''!DatasetName''' || '''Description''' || '''Extraction type''' || '''!NumberOfChains''' || '''Size in GB''' || '''Link''' || Shah2 || Downloaded from PDB web site on 10/04/2007 || - || - || 1.1, ucmp*: 4.8 || || || with criteria "Remove similar sequences at 30% identity" || first-first || 7307 || || || || || first-all || || || || || || all-all || || || || '''!DatasetName''' || '''Description''' || '''Extraction type''' || '''!NumberOfChains''' || '''Size in GB''' || '''Link''' || Shah3 || PDB_SELECT25 as of October2007 || - || - || 0.746, ucmp*: 3.4 || || || it's a six monthly updated list of- || first-first || 3464 ||0.12, ucmp*: 0.54, || || || non-redundent protein structures || first-all || 8581 || 0.30, ucmp*: 1.4 || || || Mostly used in Protein Structure Prediction || all-all ||31288 || 0.854 , ucmp*: 4.1 ||

*ucmp: uncompressed