Datasets » History » Version 20
Paweł Widera, 12/09/2013 02:45 PM
Table formatting corrected. Links to datasets fixed.
| 1 | 1 | Anonymous | |
|---|---|---|---|
| 2 | 19 | Anonymous | h1. Datasets |
| 3 | 19 | Anonymous | |
| 4 | 19 | Anonymous | |
| 5 | 19 | Anonymous | |
| 6 | 19 | Anonymous | h2. How to label datasets |
| 7 | 19 | Anonymous | |
| 8 | 1 | Anonymous | Datasets are labeled in the following way: |
| 9 | 19 | Anonymous | <pre> |
| 10 | 19 | Anonymous | [[DatasetName]].tgz |
| 11 | 19 | Anonymous | [[DatasetName]]_Literature.tgz |
| 12 | 19 | Anonymous | [[DatasetName]]_NumberOfChains_Extraction.tgz |
| 13 | 19 | Anonymous | </pre> |
| 14 | 1 | Anonymous | |
| 15 | 1 | Anonymous | whereas: |
| 16 | 20 | Paweł Widera | || *DatasetName* || Authors or web that site proposed the dataset || |
| 17 | 20 | Paweł Widera | || *Literature* || Special name given in the literatur || |
| 18 | 20 | Paweł Widera | || *NumberOfChains* || Number of (extracted) chains contained in the dataset || |
| 19 | 20 | Paweł Widera | || *Extraction* || Extraction of the models/chains: _none_, _first-first_, _first-all_, _all-all_ || |
| 20 | 18 | Anonymous | |
| 21 | 19 | Anonymous | |
| 22 | 19 | Anonymous | h2. Available Datasets |
| 23 | 19 | Anonymous | |
| 24 | 18 | Anonymous | The following datasets are available from the repository (special privileges required!): |
| 25 | 20 | Paweł Widera | || *DatasetName* || *Extraction* || *!NumberOfChains*|| *Size in MB*|| *Link* || |
| 26 | 20 | Paweł Widera | || LelukKoniecznyRoterman|| - || - || 3.5 || "Download":http://www.ico2s.org/data/instances/procksi/LelukKoniecznyRoterman.tgz || |
| 27 | 20 | Paweł Widera | || || first-first || 6 || 0.4 || "Download":http://www.ico2s.org/data/instances/procksi/LelukKoniecznyRoterman_6_first-first.tgz || |
| 28 | 20 | Paweł Widera | || || first-all || 15 || 0.9 || "Download":http://www.ico2s.org/data/instances/procksi/LelukKoniecznyRoterman_15_first-all.tgz || |
| 29 | 18 | Anonymous | |
| 30 | 20 | Paweł Widera | || *DatasetName* || *Extraction* || *!NumberOfChains*|| *Size in MB*|| *Link* || |
| 31 | 20 | Paweł Widera | || ChewKedem || - || - || 3.8 || "Download":http://www.ico2s.org/data/instances/procksi/ChewKedem.tgz || |
| 32 | 20 | Paweł Widera | || || first-first || 34 || 1.3 || "Download":http://www.ico2s.org/data/instances/procksi/ChewKedem_34_first-first.tgz || |
| 33 | 20 | Paweł Widera | || || first-all || 54 || 2.0 || "Download":http://www.ico2s.org/data/instances/procksi/ChewKedem_54_first-all.tgz || |
| 34 | 20 | Paweł Widera | || || all-all || 132 || 4.1 || "Download":http://www.ico2s.org/data/instances/procksi/ChewKedem_132_all-all.tgz || |
| 35 | 1 | Anonymous | |
| 36 | 20 | Paweł Widera | || *DatasetName* || *Extraction* || *!NumberOfChains*|| *Size in MB*|| *Link* || |
| 37 | 20 | Paweł Widera | || ProteinKinaseResource || - || - || 3.6 || "Download":http://www.ico2s.org/data/instances/procksi/ProteinKinaseResource.tgz || |
| 38 | 20 | Paweł Widera | || || first-first || 45 || 2.4 || "Download":http://www.ico2s.org/data/instances/procksi/ProteinKinaseResource_45_first-first.tgz || |
| 39 | 20 | Paweł Widera | || || first-all || 49 || 2.5 || "Download":http://www.ico2s.org/data/instances/procksi/ProteinKinaseResource_49_first-all.tgz || |
| 40 | 20 | Paweł Widera | || || all-all || 106 || 4.0 || "Download":http://www.ico2s.org/data/instances/procksi/ProteinKinaseResource_106_all-all.tgz || |
| 41 | 1 | Anonymous | |
| 42 | 20 | Paweł Widera | || *DatasetName* || *Extraction* || *!NumberOfChains*|| *Size in MB*|| *Link* || |
| 43 | 20 | Paweł Widera | || Skolnick || - || - || 5.1 || "Download":http://www.ico2s.org/data/instances/procksi/Skolnick.tgz || |
| 44 | 20 | Paweł Widera | || || first-first || 33 || 1.1 || "Download":http://www.ico2s.org/data/instances/procksi/Skolnick_33_first-first.tgz || |
| 45 | 20 | Paweł Widera | || || first-all || 65 || 2.1 || "Download":http://www.ico2s.org/data/instances/procksi/Skolnick_65_first-all.tgz || |
| 46 | 20 | Paweł Widera | || || all-all || 179 || 5.9 || "Download":http://www.ico2s.org/data/instances/procksi/Skolnick_179_all-all.tgz || |
| 47 | 18 | Anonymous | |
| 48 | 20 | Paweł Widera | || *DatasetName* || *Extraction* || *!NumberOfChains*|| *Size in MB*|| *Link* || |
| 49 | 20 | Paweł Widera | || RostSander || - || - || 7.4 || "Download":http://www.ico2s.org/data/instances/procksi/RostSander.tgz || |
| 50 | 20 | Paweł Widera | || || RS126 || 126 || 4.3 || "Download":http://www.ico2s.org/data/instances/procksi/RostSander_RS126.tgz || |
| 51 | 20 | Paweł Widera | || || first-first || 119 || 4.4 || "Download":http://www.ico2s.org/data/instances/procksi/RostSander_119_first-first.tgz || |
| 52 | 20 | Paweł Widera | || || first-all || 212 || 7.6 || "Download":http://www.ico2s.org/data/instances/procksi/RostSander_212_first-all.tgz || |
| 53 | 18 | Anonymous | |
| 54 | 20 | Paweł Widera | || *DatasetName* || *Extraction* || *!NumberOfChains*|| *Size in MB*|| *Link* || |
| 55 | 20 | Paweł Widera | || KinjoHorimotoNishikawa|| - || - || 98 || "Download":http://www.ico2s.org/data/instances/procksi/KinjoHorimotoNishikawa.tgz || |
| 56 | 20 | Paweł Widera | || || first-first || 1012 || 46 || "Download":http://www.ico2s.org/data/instances/procksi/KinjoHorimotoNishikawa_1012_first-first.tgz || |
| 57 | 20 | Paweł Widera | || || first-all || 2013 || 88 || "Download":http://www.ico2s.org/data/instances/procksi/KinjoHorimotoNishikawa_2013_first-all.tgz || |
| 58 | 17 | Anonymous | |
| 59 | 20 | Paweł Widera | || *DatasetName* || *Description* || *Extraction* || *!NumberOfChains*|| *Size in MB* || *Link* || |
| 60 | 20 | Paweł Widera | || Shah || Randomly selected 1000 proteins from PDB || - || - || 114 || "Download":http://www.ico2s.org/data/instances/procksi/Shah.tgz |
| 61 | 20 | Paweł Widera | || || || first-first || 1000 || 41 || "Download":http://www.ico2s.org/data/instances/procksi/Shah_1000_first-first.tgz || |
| 62 | 20 | Paweł Widera | || || || first-all || 1943 || 80 || "Download":http://www.ico2s.org/data/instances/procksi/Shah_1943_first-all.tgz || |
| 63 | 20 | Paweł Widera | || || || all-all || 4007 || 124 || "Download":http://www.ico2s.org/data/instances/procksi/Shah_4007_all-all.tgz || |
| 64 | 17 | Anonymous | |
| 65 | 17 | Anonymous | |
| 66 | 20 | Paweł Widera | || *DatasetName* || *Description* || *Extraction* || *!NumberOfChains*|| *Size in GB* || *Link* || |
| 67 | 20 | Paweł Widera | || PDB_SELECT30_04-2008 || Downloaded from PDB web site on 10/04/2008 || - || - || *1.1*, ucmp*: *4.8*|| "Download":http://www.ico2s.org/data/instances/procksi/PDB_SELECT30_04-2008_7307.tar.gz || |
| 68 | 20 | Paweł Widera | || || with criteria "Remove similar sequences at 30% identity" || first-first || 7183 || *0.285*, ucmp*: *1.2* || "Download":http://www.ico2s.org/data/instances/procksi/PDB_SELECT30_04-2008_7183_first-first.tar.gz || |
| 69 | 20 | Paweł Widera | || || || first-all || 14651 || *0.60* , ucmp:*2.7* || "Download":http://www.ico2s.org/data/instances/procksi/PDB_SELECT30_04-2008_14651_first-all.tar.gz || |
| 70 | 20 | Paweł Widera | || || || all-all || 43025 || *1.2* , ucmp*: *5.5* || "Download":http://www.ico2s.org/data/instances/procksi/PDB_SELECT30_04-2008_43025_all-all.tar.gz || |
| 71 | 19 | Anonymous | |
| 72 | 20 | Paweł Widera | || *DatasetName* || *Description* || *Extraction* || *!NumberOfChains*|| *Size in GB* || *Link* || |
| 73 | 20 | Paweł Widera | || PDB_SELECT25_10-2007 || PDB_SELECT25 as of October2007 || - || - || *0.746*, ucmp*: *3.4* || "Download":http://www.ico2s.org/data/instances/procksi/PDB_SELECT25_10-2007_3560.tar.gz || |
| 74 | 20 | Paweł Widera | || || it's a six monthly updated list of- || first-first || 3464 ||*0.12*, ucmp*: *0.54*, || "Download":http://www.ico2s.org/data/instances/procksi/PDB_SELECT25_10-2007_3464_first-first.tar.gz || |
| 75 | 20 | Paweł Widera | || || non-redundent protein structures || first-all || 8581 || *0.30*, ucmp*: *1.4* || "Download":http://www.ico2s.org/data/instances/procksi/PDB_SELECT25_10-2007_8581_first-all.tar.gz || |
| 76 | 20 | Paweł Widera | || || Mostly used in Protein Structure Prediction || all-all ||31288 || *0.854* , ucmp*: *4.1* || "Download":http://www.ico2s.org/data/instances/procksi/PDB_SELECT25_10-2007_31288_all-all.tar.gz || |
| 77 | 20 | Paweł Widera | |
| 78 | 1 | Anonymous | |
| 79 | 1 | Anonymous | *ucmp: uncompressed |