DocuLiterature » History » Version 4
Version 3 (Anonymous, 08/28/2007 03:33 PM) → Version 4/6 (Anonymous, 03/17/2008 09:46 AM)
= Further Literature =
== 2008 ==
D.A. Pelta, J.R. Gonzalez, and M. Moreno Vega[[br]]
'''A simple and fast heuristic for protein structure comparison'''[[br]]
''BMC Bioinformatics'', 2008 (to appear)
A.A. Shah, D. Barthel, P. Łukasiak, J. Błażewicz, and N. Krasnogor ([http://www.ingentaconnect.com/search/article?title=web+and+grid&title_type=tka&author=Krasnogor&journal=current+bioinformatics&journal_type=words&volume=3&issue=1&year_from=2003&year_to=2008&database=1&pageSize=20&index=1 publisher])[[br]]
'''Web & Grid Technologies in Bioinformatics, Computational Biology and Systems Biology: ProCKSI: A Review.''' [[br]]
''Current Bioinformatics'', 3, 10-31, 2008.
== 2007 ==
D. Barthel, J.D. Hirst, J. Błażewicz, E.K. Burke, and N. Krasnogor ([http://www.biomedcentral.com/1471-2105/8/416/abstract publisher])[[br]]
'''The ProCKSI Server: A Decision Support System Meta-Server for Protein (Structure) Comparison, Knowledge, Comparison using Kolmogorov and other Similarity and Information.''' [[br]] Measures[[br]]
''BMC Bioinformatics'' 2007, 8, 416.
A.A. Shah, D. Barthel, and N. Krasnogor ([http://www.springerlink.com/content/90n46423p200502r/ publisher], [http://dblp.uni-trier.de/rec/bibtex/conf/ispa/ShahBK07 bibtex])[[br]]
'''Grid and Distributed Public Computing Schemes for Structural Proteomics: A Short Overview.'''[[br]]
In P. Thulasiraman, X. He, T. Li-Xu, M. Denko, R.K. Thulasiram, and L.T. Yang (Eds.), ''Frontiers of High Performance Computing and Networking ISPA 2007 Workshops''. Lecture Notes in Computer Science, 4743, Springer, 424-434, 2007.
A.A. Shah, J. D. Barthel, and N. Krasnogor[[br]]
'''Protein Structure Comparison, Analysis and Clustering: An overview of the ProCKSI Decision Support System.'''[[br]]
In ''Proceedings of the 4th International Biotechnology Symposium (IBS 2007)''.[[br]]
University of Sindh, Pakistan, Nov.4-8, 2007.
D. Barthel, J.D. Hirst, J. Blazewicz, Blazewicz and N. Krasnogor[[br]]
'''ProCKSI: A Meta-Server for Protein Comparison using Kolmogorov and other Similarity Measures'''[[br]]
Krasnogor, Late-Breaking Results, ''5th European Conference on Computational Biology (ECCB06)'', Israel, 2007.
F. Birzele, J. E. Gewehr, G. Csaba, [http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/7/1015 Measuring the Similarity of Protein Structures by Means of the Universal Similarity Metric][[br]]
N. Krasnogor and R. Zimmer ([http://doi.wiley.com/10.1002/prot.20331 publisher]) [[br]]
'''Vorolign - Fast Structural Alignment using Voronoi Contacts'''[[br]]
D. A. Pelta. ''Bioinformatics'' 23, e205-e211, 2007. 20(7), 1015-1021, 2004.
== 2005 ==
D.A. Pelta, N. Krasnogor, C. Bousono-Calzon, J.L. Verdegay, J.D. Hirst, and E.K. Burke ([http://www.sciencedirect.com/science/article/B6V05-4DV1959-2/2/aabb4b5cb25dabb343c6d7f7109aa615 publisher])[[br]]
'''A [http://www.sciencedirect.com/science/article/B6V05-4DV1959-2/2/aabb4b5cb25dabb343c6d7f7109aa615 A fuzzy sets based generalization of contact maps for the overlap of protein structures'''[[br]] structures][[br]]
D. A. Pelta, N. Krasnogor, C. Bousono-Calzon, J. L. Verdegay, J. D. Hirst and E. Burke. ''Fuzzy Sets and Systems'' 152(1), 101-123, 2005.
Y. Zhang [http://www.liebertonline.com/doi/abs/10.1089/106652704773416876 1001 optimal PDB structure alignments: Integer Programming methods for finding the maximum contact map overlap][[br]]
A. Caprara, G. Lancia, B. Carr, B. Walenz and S. Istrail, ''Journal of Computational Biology'' 11(1), 27-52, 2004.
[http://bioinformatics.oxfordjournals.org/cgi/content/abstract/16/6/566 DaliLite workbench for protein structure comparison][[br]]
L. Holm and J. Skolnick ([http://nar.oxfordjournals.org/cgi/content/abstract/33/7/2302 publisher])[[br]] Park, <i>Bioinformatics</i> 16, 566-567, 2000.
[http://www.nature.com/ng/journal/v36/n7/full/ng0704-664.html A Gene Network for Navigating the Literature][[br]]
'''TM-align: R. Hoffmann and A. Valencia, ''Nature Genetics'' 36, 664-664, 2004.
[http://protein.oupjournals.org/cgi/content/abstract/11/9/739 Protein structure alignment by incremental combinatorial extension (CE) of the optimal path][[br]]
I. N. Shindyalov and P. E. Bourne, ''Protein Engineering'' 11, 739-747, 1998.
[http://nar.oxfordjournals.org/cgi/content/abstract/33/7/2302 TM-align: A protein structure alignment algorithm based on TM-score'''[[br]] TM-score][[br]]
Y. Zhang and J. Skolnick, ''Nucleic Acids Research'' 33, 2302-2309, 2005.
J. Zhu and Y. Weng ([http://doi.wiley.com/10.1002/prot.20331 publisher])[[br]]
'''FAST: [http://doi.wiley.com/10.1002/prot.20331 FAST: A Novel Protein Structure Alignment Algorithm'''[[br]] Algorithm][[br]]
''Proteins: J. Zhu and Y. Weng, <i>Proteins: Structure, Function and Bioinformatics'' Bioinformatics</i> 14, 417-423, 2005.
C. Bousono-Calzon, A. Oropesa-Garcia, [http://doi.wiley.com/10.1002/prot.20331 Vorolign - Fast Structural Alignment using Voronoi Contacts][[br]]
F. Birzele, J. E. Gewehr, G. Csaba and R. Zimmer, ''Bioinformatics'' 23, e205-e211, 2007.
[http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/7/1015 Measuring the Similarity of Protein Structures by Means of the Universal Similarity Metric][[br]]
N. Krasnogor ([http://www.cs.nott.ac.uk/~nxk/PAPERS/s112-01.pdf personal])[[br]]
'''Selecting and D. A. Pelta. ''Bioinformatics'' 20(7), 1015-1021, 2004.
[http://www.cs.nott.ac.uk/~nxk/PAPERS/s112-01.pdf Selecting protein fuzzy contact maps through information and structure measures'''[[br]] measures][[br]]
C. Bousono-Calzon, A. Oropesa-Garcia and N. Krasnogor. Proceedings of the ''Fourth Conference of the European Society for Fuzzy Logic and Technology and 11 Recontres Francophones sur la Logique Floue et ses Applications (EUSFLAT-LFA, 2005)'', pp 1106-1111, 2005.
D.A. Pelta, J.R. Gonzales, and N. Krasnogor ([http://www.cs.nott.ac.uk/~nxk/PAPERS/s112-04.pdf personal])[[br]]
'''Protein [http://www.cs.nott.ac.uk/~nxk/PAPERS/s112-04.pdf Protein Structure Comparison through Fuzzy Contact Maps and the Universal Similarity Metric'''[[br]] Metric][[br]]
D. A. Pelta, J. R. Gonzales and N. Krasnogor. Proceedings of the ''Fourth Conference of the European Society for Fuzzy Logic and Technology and 11 Recontres Francophones sur la Logique Floue et ses Applications (EUSFLAT-LFA, 2005)'', 1124-1129, 2005.
R. Hoffmann [http://www.sciencemag.org/cgi/content/abstract/273/5275/595 Mapping the protein universe][[br]]
Holm L. and A. Valencia ([http://bioinformatics.oxfordjournals.org/cgi/content/abstract/21/suppl_2/ii252?etoc publisher])[[br]] Sander C., ''Science'' 273, 595-602, 1996.
[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Retrieve&dopt=Citation&list_uids=8377180 Protein Structure Comparison by Alignment of Distance Matrices][[br]]
'''Implementing L. Holm and C. Sander, ''J. Mol. Biol.'' 223, 123-138, 1993.
[http://bioinformatics.oxfordjournals.org/cgi/content/abstract/21/suppl_2/ii252?etoc Implementing the iHOP concept for navigation of biomedical literature'''[[br]] literature][[br]]
R. Hoffmann, and A. Valencia, ''Bioinformatics'' 21, ii252-ii258, 2005.
== 2004 == [http://bioinformatics.oxfordjournals.org/cgi/content/abstract/16/7/660 Visualizing large hierarchical clusters in hyperbolic space][[br]]
N. Krasnogor J. Bingham, S. Sudarsanam, ''Bioinformatics'' 16(7), 660-661, 2000.
MOLSCRIPT: A Program to Produce Both Detailed and D.A. Pelta ([http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/7/1015 publisher])[[br]]
'''Measuring the Similarity Schematic Plots of Protein Structures by Means of the Universal Similarity Metric'''[[br]] Structures[[br]]
''Bioinformatics'' 20(7), 1015-1021, 2004. Per J. Kraulis, J. Appl. Cryst. 24, 946-950, 1991.
A. Caprara, G. Lancia, B. Carr, B. Walenz, and S. Istrail ([http://www.liebertonline.com/doi/abs/10.1089/106652704773416876 puslisher])[[br]] Raster3D: photorealistic molecular images[[br]]
'''1001 optimal PDB structure alignments: Integer Programming methods for finding the maximum contact map overlap'''[[br]]
''Journal of Computational Biology'' 11(1), 27-52, 2004. E.A. Merritt, D.J. Bacon, ''Meth. Enzymol.'' 277, 505-524, 1997.
R. Hoffmann and A. Valencia ([http://www.nature.com/ng/journal/v36/n7/full/ng0704-664.html publisher])[[br]]
'''A Gene Network for Navigating the Literature'''[[br]]
''Nature Genetics'' 36, 664-664, 2004.
N. Krasnogor and D.A. Pelta ([http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/7/1015 publisher])[[br]]
'''Measuring the Similarity of [http://nar.oxfordjournals.org/cgi/content/abstract/28/1/235 The Protein Structures by Means of the Universal Similarity Metric'''[[br]] Data Bank][[br]]
''Bioinformatics'' 20(7), 1015-1021, 2004.
== 2000 ==
L. Holm and J. Park ([http://bioinformatics.oxfordjournals.org/cgi/content/abstract/16/6/566 publisher])[[br]]
'''!DaliLite workbench for protein structure comparison'''[[br]]
''Bioinformatics'' 16, 566-567, 2000.
H. Berman, J. Westbrook, Z. Feng, G. Gilliland, T. Bhat, H. Weissig, I. Shindyalov, and P. Bourne ([http://nar.oxfordjournals.org/cgi/content/abstract/28/1/235 publisher])[[br]]
'''The Protein Data Bank'''[[br]]
''Nucleic Bourne, Nucleic Acids Res.'' Res. 28, 235–242, 2000.
J. Bingham, S. Sudarsanam ([http://bioinformatics.oxfordjournals.org/cgi/content/abstract/16/7/660 publisher])[[br]]
'''Visualizing large hierarchical clusters in hyperbolic space'''[[br]]
''Bioinformatics'' 16(7), 660-661, 2000.
== 1998 ==
I. N. Shindyalov and P. E. Bourne ([http://bioinformatics.oxfordjournals.org/cgi/content/abstract/16/7/660 publisher])[[br]]
'''Protein structure alignment by incremental combinatorial extension (CE) of the optimal path'''[[br]]
''Protein Engineering'' 11, 739-747, 1998.
== 1997 ==
E.A. Merritt and D.J. Bacon[[br]]
'''Raster3D: photorealistic molecular images'''[[br]]
''Meth. Enzymol.'' 277, 505-524, 1997.
== 1996 ==
L. Holm and C. Sander ([http://www.sciencemag.org/cgi/content/abstract/273/5275/595 publisher])[[br]]
'''Mapping the protein universe'''[[br]]
''Science'' 273, 595-602, 1996.
== 1993 ==
L. Holm and C. Sander ([http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Retrieve&dopt=Citation&list_uids=8377180 publisher]))[[br]]
'''Protein Structure Comparison by Alignment of Distance Matrices'''[[br]]
''J. Mol. Biol.'' 223, 123-138, 1993.
== 1991 ==
P.J. Kraulis[[br]]
'''MOLSCRIPT: A Program to Produce Both Detailed and Schematic Plots of Protein Structures'''[[br]]
''J. Appl. Cryst.'' 24, 946-950, 1991.
== 2008 ==
D.A. Pelta, J.R. Gonzalez, and M. Moreno Vega[[br]]
'''A simple and fast heuristic for protein structure comparison'''[[br]]
''BMC Bioinformatics'', 2008 (to appear)
A.A. Shah, D. Barthel, P. Łukasiak, J. Błażewicz, and N. Krasnogor ([http://www.ingentaconnect.com/search/article?title=web+and+grid&title_type=tka&author=Krasnogor&journal=current+bioinformatics&journal_type=words&volume=3&issue=1&year_from=2003&year_to=2008&database=1&pageSize=20&index=1 publisher])[[br]]
'''Web & Grid Technologies in Bioinformatics, Computational Biology and Systems Biology: ProCKSI: A Review.''' [[br]]
''Current Bioinformatics'', 3, 10-31, 2008.
== 2007 ==
D. Barthel, J.D. Hirst, J. Błażewicz, E.K. Burke, and N. Krasnogor ([http://www.biomedcentral.com/1471-2105/8/416/abstract publisher])[[br]]
'''The ProCKSI Server: A Decision Support System Meta-Server for Protein (Structure) Comparison, Knowledge, Comparison using Kolmogorov and other Similarity and Information.''' [[br]] Measures[[br]]
''BMC Bioinformatics'' 2007, 8, 416.
A.A. Shah, D. Barthel, and N. Krasnogor ([http://www.springerlink.com/content/90n46423p200502r/ publisher], [http://dblp.uni-trier.de/rec/bibtex/conf/ispa/ShahBK07 bibtex])[[br]]
'''Grid and Distributed Public Computing Schemes for Structural Proteomics: A Short Overview.'''[[br]]
In P. Thulasiraman, X. He, T. Li-Xu, M. Denko, R.K. Thulasiram, and L.T. Yang (Eds.), ''Frontiers of High Performance Computing and Networking ISPA 2007 Workshops''. Lecture Notes in Computer Science, 4743, Springer, 424-434, 2007.
A.A. Shah, J. D. Barthel, and N. Krasnogor[[br]]
'''Protein Structure Comparison, Analysis and Clustering: An overview of the ProCKSI Decision Support System.'''[[br]]
In ''Proceedings of the 4th International Biotechnology Symposium (IBS 2007)''.[[br]]
University of Sindh, Pakistan, Nov.4-8, 2007.
D. Barthel, J.D. Hirst, J. Blazewicz, Blazewicz and N. Krasnogor[[br]]
'''ProCKSI: A Meta-Server for Protein Comparison using Kolmogorov and other Similarity Measures'''[[br]]
Krasnogor, Late-Breaking Results, ''5th European Conference on Computational Biology (ECCB06)'', Israel, 2007.
F. Birzele, J. E. Gewehr, G. Csaba, [http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/7/1015 Measuring the Similarity of Protein Structures by Means of the Universal Similarity Metric][[br]]
N. Krasnogor and R. Zimmer ([http://doi.wiley.com/10.1002/prot.20331 publisher]) [[br]]
'''Vorolign - Fast Structural Alignment using Voronoi Contacts'''[[br]]
D. A. Pelta. ''Bioinformatics'' 23, e205-e211, 2007. 20(7), 1015-1021, 2004.
== 2005 ==
D.A. Pelta, N. Krasnogor, C. Bousono-Calzon, J.L. Verdegay, J.D. Hirst, and E.K. Burke ([http://www.sciencedirect.com/science/article/B6V05-4DV1959-2/2/aabb4b5cb25dabb343c6d7f7109aa615 publisher])[[br]]
'''A [http://www.sciencedirect.com/science/article/B6V05-4DV1959-2/2/aabb4b5cb25dabb343c6d7f7109aa615 A fuzzy sets based generalization of contact maps for the overlap of protein structures'''[[br]] structures][[br]]
D. A. Pelta, N. Krasnogor, C. Bousono-Calzon, J. L. Verdegay, J. D. Hirst and E. Burke. ''Fuzzy Sets and Systems'' 152(1), 101-123, 2005.
Y. Zhang [http://www.liebertonline.com/doi/abs/10.1089/106652704773416876 1001 optimal PDB structure alignments: Integer Programming methods for finding the maximum contact map overlap][[br]]
A. Caprara, G. Lancia, B. Carr, B. Walenz and S. Istrail, ''Journal of Computational Biology'' 11(1), 27-52, 2004.
[http://bioinformatics.oxfordjournals.org/cgi/content/abstract/16/6/566 DaliLite workbench for protein structure comparison][[br]]
L. Holm and J. Skolnick ([http://nar.oxfordjournals.org/cgi/content/abstract/33/7/2302 publisher])[[br]] Park, <i>Bioinformatics</i> 16, 566-567, 2000.
[http://www.nature.com/ng/journal/v36/n7/full/ng0704-664.html A Gene Network for Navigating the Literature][[br]]
'''TM-align: R. Hoffmann and A. Valencia, ''Nature Genetics'' 36, 664-664, 2004.
[http://protein.oupjournals.org/cgi/content/abstract/11/9/739 Protein structure alignment by incremental combinatorial extension (CE) of the optimal path][[br]]
I. N. Shindyalov and P. E. Bourne, ''Protein Engineering'' 11, 739-747, 1998.
[http://nar.oxfordjournals.org/cgi/content/abstract/33/7/2302 TM-align: A protein structure alignment algorithm based on TM-score'''[[br]] TM-score][[br]]
Y. Zhang and J. Skolnick, ''Nucleic Acids Research'' 33, 2302-2309, 2005.
J. Zhu and Y. Weng ([http://doi.wiley.com/10.1002/prot.20331 publisher])[[br]]
'''FAST: [http://doi.wiley.com/10.1002/prot.20331 FAST: A Novel Protein Structure Alignment Algorithm'''[[br]] Algorithm][[br]]
''Proteins: J. Zhu and Y. Weng, <i>Proteins: Structure, Function and Bioinformatics'' Bioinformatics</i> 14, 417-423, 2005.
C. Bousono-Calzon, A. Oropesa-Garcia, [http://doi.wiley.com/10.1002/prot.20331 Vorolign - Fast Structural Alignment using Voronoi Contacts][[br]]
F. Birzele, J. E. Gewehr, G. Csaba and R. Zimmer, ''Bioinformatics'' 23, e205-e211, 2007.
[http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/7/1015 Measuring the Similarity of Protein Structures by Means of the Universal Similarity Metric][[br]]
N. Krasnogor ([http://www.cs.nott.ac.uk/~nxk/PAPERS/s112-01.pdf personal])[[br]]
'''Selecting and D. A. Pelta. ''Bioinformatics'' 20(7), 1015-1021, 2004.
[http://www.cs.nott.ac.uk/~nxk/PAPERS/s112-01.pdf Selecting protein fuzzy contact maps through information and structure measures'''[[br]] measures][[br]]
C. Bousono-Calzon, A. Oropesa-Garcia and N. Krasnogor. Proceedings of the ''Fourth Conference of the European Society for Fuzzy Logic and Technology and 11 Recontres Francophones sur la Logique Floue et ses Applications (EUSFLAT-LFA, 2005)'', pp 1106-1111, 2005.
D.A. Pelta, J.R. Gonzales, and N. Krasnogor ([http://www.cs.nott.ac.uk/~nxk/PAPERS/s112-04.pdf personal])[[br]]
'''Protein [http://www.cs.nott.ac.uk/~nxk/PAPERS/s112-04.pdf Protein Structure Comparison through Fuzzy Contact Maps and the Universal Similarity Metric'''[[br]] Metric][[br]]
D. A. Pelta, J. R. Gonzales and N. Krasnogor. Proceedings of the ''Fourth Conference of the European Society for Fuzzy Logic and Technology and 11 Recontres Francophones sur la Logique Floue et ses Applications (EUSFLAT-LFA, 2005)'', 1124-1129, 2005.
R. Hoffmann [http://www.sciencemag.org/cgi/content/abstract/273/5275/595 Mapping the protein universe][[br]]
Holm L. and A. Valencia ([http://bioinformatics.oxfordjournals.org/cgi/content/abstract/21/suppl_2/ii252?etoc publisher])[[br]] Sander C., ''Science'' 273, 595-602, 1996.
[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Retrieve&dopt=Citation&list_uids=8377180 Protein Structure Comparison by Alignment of Distance Matrices][[br]]
'''Implementing L. Holm and C. Sander, ''J. Mol. Biol.'' 223, 123-138, 1993.
[http://bioinformatics.oxfordjournals.org/cgi/content/abstract/21/suppl_2/ii252?etoc Implementing the iHOP concept for navigation of biomedical literature'''[[br]] literature][[br]]
R. Hoffmann, and A. Valencia, ''Bioinformatics'' 21, ii252-ii258, 2005.
== 2004 == [http://bioinformatics.oxfordjournals.org/cgi/content/abstract/16/7/660 Visualizing large hierarchical clusters in hyperbolic space][[br]]
N. Krasnogor J. Bingham, S. Sudarsanam, ''Bioinformatics'' 16(7), 660-661, 2000.
MOLSCRIPT: A Program to Produce Both Detailed and D.A. Pelta ([http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/7/1015 publisher])[[br]]
'''Measuring the Similarity Schematic Plots of Protein Structures by Means of the Universal Similarity Metric'''[[br]] Structures[[br]]
''Bioinformatics'' 20(7), 1015-1021, 2004. Per J. Kraulis, J. Appl. Cryst. 24, 946-950, 1991.
A. Caprara, G. Lancia, B. Carr, B. Walenz, and S. Istrail ([http://www.liebertonline.com/doi/abs/10.1089/106652704773416876 puslisher])[[br]] Raster3D: photorealistic molecular images[[br]]
'''1001 optimal PDB structure alignments: Integer Programming methods for finding the maximum contact map overlap'''[[br]]
''Journal of Computational Biology'' 11(1), 27-52, 2004. E.A. Merritt, D.J. Bacon, ''Meth. Enzymol.'' 277, 505-524, 1997.
R. Hoffmann and A. Valencia ([http://www.nature.com/ng/journal/v36/n7/full/ng0704-664.html publisher])[[br]]
'''A Gene Network for Navigating the Literature'''[[br]]
''Nature Genetics'' 36, 664-664, 2004.
N. Krasnogor and D.A. Pelta ([http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/7/1015 publisher])[[br]]
'''Measuring the Similarity of [http://nar.oxfordjournals.org/cgi/content/abstract/28/1/235 The Protein Structures by Means of the Universal Similarity Metric'''[[br]] Data Bank][[br]]
''Bioinformatics'' 20(7), 1015-1021, 2004.
== 2000 ==
L. Holm and J. Park ([http://bioinformatics.oxfordjournals.org/cgi/content/abstract/16/6/566 publisher])[[br]]
'''!DaliLite workbench for protein structure comparison'''[[br]]
''Bioinformatics'' 16, 566-567, 2000.
H. Berman, J. Westbrook, Z. Feng, G. Gilliland, T. Bhat, H. Weissig, I. Shindyalov, and P. Bourne ([http://nar.oxfordjournals.org/cgi/content/abstract/28/1/235 publisher])[[br]]
'''The Protein Data Bank'''[[br]]
''Nucleic Bourne, Nucleic Acids Res.'' Res. 28, 235–242, 2000.
J. Bingham, S. Sudarsanam ([http://bioinformatics.oxfordjournals.org/cgi/content/abstract/16/7/660 publisher])[[br]]
'''Visualizing large hierarchical clusters in hyperbolic space'''[[br]]
''Bioinformatics'' 16(7), 660-661, 2000.
== 1998 ==
I. N. Shindyalov and P. E. Bourne ([http://bioinformatics.oxfordjournals.org/cgi/content/abstract/16/7/660 publisher])[[br]]
'''Protein structure alignment by incremental combinatorial extension (CE) of the optimal path'''[[br]]
''Protein Engineering'' 11, 739-747, 1998.
== 1997 ==
E.A. Merritt and D.J. Bacon[[br]]
'''Raster3D: photorealistic molecular images'''[[br]]
''Meth. Enzymol.'' 277, 505-524, 1997.
== 1996 ==
L. Holm and C. Sander ([http://www.sciencemag.org/cgi/content/abstract/273/5275/595 publisher])[[br]]
'''Mapping the protein universe'''[[br]]
''Science'' 273, 595-602, 1996.
== 1993 ==
L. Holm and C. Sander ([http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Retrieve&dopt=Citation&list_uids=8377180 publisher]))[[br]]
'''Protein Structure Comparison by Alignment of Distance Matrices'''[[br]]
''J. Mol. Biol.'' 223, 123-138, 1993.
== 1991 ==
P.J. Kraulis[[br]]
'''MOLSCRIPT: A Program to Produce Both Detailed and Schematic Plots of Protein Structures'''[[br]]
''J. Appl. Cryst.'' 24, 946-950, 1991.