ProteinNomenclature » History » Version 1
Anonymous, 11/16/2007 04:16 PM
Policy
| 1 | 1 | Anonymous | = Protein Nomenclature = |
|---|---|---|---|
| 2 | 1 | Anonymous | |
| 3 | 1 | Anonymous | Files for structures, models, and chains are labelled in the following way, which complies with standards for describing domains:[[br]] |
| 4 | 1 | Anonymous | || '''Structures''' || Label . pdb || |
| 5 | 1 | Anonymous | || '''Models''' || Label - Model . pdb || |
| 6 | 1 | Anonymous | || '''Chains''' || Label Chain - Model . pdb || |
| 7 | 1 | Anonymous | |
| 8 | 1 | Anonymous | being |
| 9 | 1 | Anonymous | || '''Label''' || usually the ''PDB Code'', or a user defined label |
| 10 | 1 | Anonymous | || '''Chain''' || ''Chain Label'' for defined chaines, e.g. ''R'' |
| 11 | 1 | Anonymous | || || ''_'' (underscore) for single, undefined chains |
| 12 | 1 | Anonymous | || || ''Chain Number'' for multiple undefined chains, e.g. ''2'' for the second chain |
| 13 | 1 | Anonymous | || '''Model''' || ''Model Number'', e.g. ''3'' for the third model |
| 14 | 1 | Anonymous | |
| 15 | 1 | Anonymous | Examples: |
| 16 | 1 | Anonymous | * 1att.pdf |
| 17 | 1 | Anonymous | * 1att-1.pdf |
| 18 | 1 | Anonymous | * 1attA-2.pdf |
| 19 | 1 | Anonymous | * 1att_-1.pdf |