ProteinNomenclature » History » Version 2
Paweł Widera, 11/20/2007 06:07 PM
pdf -> pdb
1 | 1 | Anonymous | = Protein Nomenclature = |
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2 | 1 | Anonymous | |
3 | 1 | Anonymous | Files for structures, models, and chains are labelled in the following way, which complies with standards for describing domains:[[br]] |
4 | 1 | Anonymous | || '''Structures''' || Label . pdb || |
5 | 1 | Anonymous | || '''Models''' || Label - Model . pdb || |
6 | 1 | Anonymous | || '''Chains''' || Label Chain - Model . pdb || |
7 | 1 | Anonymous | |
8 | 1 | Anonymous | being |
9 | 1 | Anonymous | || '''Label''' || usually the ''PDB Code'', or a user defined label |
10 | 1 | Anonymous | || '''Chain''' || ''Chain Label'' for defined chaines, e.g. ''R'' |
11 | 1 | Anonymous | || || ''_'' (underscore) for single, undefined chains |
12 | 1 | Anonymous | || || ''Chain Number'' for multiple undefined chains, e.g. ''2'' for the second chain |
13 | 1 | Anonymous | || '''Model''' || ''Model Number'', e.g. ''3'' for the third model |
14 | 1 | Anonymous | |
15 | 1 | Anonymous | Examples: |
16 | 2 | Paweł Widera | * 1att.pdb |
17 | 2 | Paweł Widera | * 1att-1.pdb |
18 | 2 | Paweł Widera | * 1attA-2.pdb |
19 | 2 | Paweł Widera | * 1att_-1.pdb |