ProteinNomenclature » History » Version 2

Paweł Widera, 11/20/2007 06:07 PM
pdf -> pdb

1 1 Anonymous
= Protein Nomenclature =
2 1 Anonymous
3 1 Anonymous
Files for structures, models, and chains are labelled in the following way, which complies with standards for describing domains:[[br]]
4 1 Anonymous
 || '''Structures''' || Label . pdb ||
5 1 Anonymous
 || '''Models'''     || Label - Model . pdb ||
6 1 Anonymous
 || '''Chains'''     || Label Chain - Model . pdb ||
7 1 Anonymous
8 1 Anonymous
being
9 1 Anonymous
 || '''Label'''     || usually the ''PDB Code'', or a user defined label
10 1 Anonymous
 || '''Chain'''  || ''Chain Label'' for defined chaines, e.g. ''R''
11 1 Anonymous
 ||              || ''_'' (underscore) for single, undefined chains
12 1 Anonymous
 ||              || ''Chain Number'' for multiple undefined chains, e.g. ''2'' for the second chain
13 1 Anonymous
 || '''Model'''  || ''Model Number'', e.g. ''3'' for the third model
14 1 Anonymous
15 1 Anonymous
Examples:
16 2 Paweł Widera
 * 1att.pdb
17 2 Paweł Widera
 * 1att-1.pdb
18 2 Paweł Widera
 * 1attA-2.pdb
19 2 Paweł Widera
 * 1att_-1.pdb