ProteinNomenclature » History » Version 3
Paweł Widera, 11/20/2007 06:07 PM
pdf -> pdb
| 1 | 1 | Anonymous | |
|---|---|---|---|
| 2 | 3 | Paweł Widera | h1. Protein Nomenclature |
| 3 | 3 | Paweł Widera | |
| 4 | 3 | Paweł Widera | |
| 5 | 1 | Anonymous | Files for structures, models, and chains are labelled in the following way, which complies with standards for describing domains:[[br]] |
| 6 | 3 | Paweł Widera | || *Structures* || Label . pdb || |
| 7 | 3 | Paweł Widera | || *Models* || Label - Model . pdb || |
| 8 | 3 | Paweł Widera | || *Chains* || Label Chain - Model . pdb || |
| 9 | 1 | Anonymous | |
| 10 | 1 | Anonymous | being |
| 11 | 3 | Paweł Widera | || *Label* || usually the _PDB Code_, or a user defined label |
| 12 | 3 | Paweł Widera | || *Chain* || _Chain Label_ for defined chaines, e.g. _R_ |
| 13 | 3 | Paweł Widera | || || +_ (underscore) for single, undefined chains |
| 14 | 3 | Paweł Widera | || || _Chain Number_ for multiple undefined chains, e.g. _2_ for the second chain |
| 15 | 3 | Paweł Widera | || *Model* || _Model Number_, e.g. _3_ for the third model |
| 16 | 1 | Anonymous | |
| 17 | 2 | Paweł Widera | Examples: |
| 18 | 3 | Paweł Widera | * 1att.pdb |
| 19 | 3 | Paweł Widera | * 1att-1.pdb |
| 20 | 3 | Paweł Widera | * 1attA-2.pdb |
| 21 | 3 | Paweł Widera | * 1att_-1.pdb |