ProCKSI

= Similarity Comparison Methods =

This page gives an overview of 3D structural similarity comparison methods for proteins, and their availablility and source.

|| Comparison Method || Web || Latest Version ||
|| CE || http://cl.sdsc.edu/ || 1.0.2 ||
|| !DaliLite || http://ekhidna.biocenter.helsinki.fi/dali_server/ || 2.4.5 ||
|| FAST || http://biowulf.bu.edu/FAST/ || 22-02-2004 ||
|| !FlexProt || http://bioinfo3d.cs.tau.ac.il/FlexProt/ || ||
|| FATCAT || http://fatcat.burnham.org/fatcat/ || ||
|| K2SA || http://zlab.bu.edu/k2sa/index.shtml || ||
|| Matras || http://biunit.naist.jp/matras/ || ||
|| !MultiProt || http://bioinfo3d.cs.tau.ac.il/MultiProt/ || ||
|| LGA || https://ipo.llnl.gov/technology/software/softwaretitles/lga.php || ||
|| MaxCMO-MSVNS || http://modo.ugr.es/en/jrgonzalez/msvns4maxcmo || 1.0 ||
|| !MaxSub || http://www.cs.bgu.ac.il/~dfischer/MaxSub/ || ||
|| Superpose || http://wishart.biology.ualberta.ca/SuperPose/ || 1.0 ||
|| SHEBA || http://rex.nci.nih.gov/RESEARCH/basic/lmb/mms/sheba.htm || 4.0.1 ||
|| SSM || http://www.ebi.ac.uk/msd-srv/ssm/ssmstart.html || 2.34 ||
|| TMalign || http://zhang.bioinformatics.ku.edu/TM-align/ || 2007-10-16 ||
|| !TopMatch || https://topmatch.services.came.sbg.ac.at/ || ||
|| URMS || http://biozon.org/ftp/software/urms/ || 18-02-1004 ||
|| Vorolign || http://www.bio.ifi.lmu.de/Vorolign/ || 1.0.1 ||