Similarity Comparison Methods¶
This page gives an overview of 3D structural similarity comparison methods for proteins, and their availablility and source.
| Comparison Method | Web | Latest Version | ||||||||||||
| CE | http://cl.sdsc.edu/ | 1.0.2 | ||||||||||||
| DaliLite | http://ekhidna.biocenter.helsinki.fi/dali_server/ | 2.4.5 | ||||||||||||
| FAST | http://biowulf.bu.edu/FAST/ | 22-02-2004 | ||||||||||||
| FlexProt | http://bioinfo3d.cs.tau.ac.il/FlexProt/ | |||||||||||||
| FATCAT | http://fatcat.burnham.org/fatcat/ | |||||||||||||
| K2SA | http://zlab.bu.edu/k2sa/index.shtml | |
Matras | http://biunit.naist.jp/matras/ | ||||||||||
| MultiProt | http://bioinfo3d.cs.tau.ac.il/MultiProt/ | |||||||||||||
| LGA | https://ipo.llnl.gov/technology/software/softwaretitles/lga.php | |||||||||||||
| MaxCMO-MSVNS | http://modo.ugr.es/en/jrgonzalez/msvns4maxcmo | 1.0 | ||||||||||||
| MaxSub | http://www.cs.bgu.ac.il/~dfischer/MaxSub/ | |||||||||||||
| Superpose | http://wishart.biology.ualberta.ca/SuperPose/ | 1.0 | ||||||||||||
| SHEBA | http://rex.nci.nih.gov/RESEARCH/basic/lmb/mms/sheba.htm | 4.0.1 | ||||||||||||
| SSM | http://www.ebi.ac.uk/msd-srv/ssm/ssmstart.html | 2.34 | ||||||||||||
| TMalign | http://zhang.bioinformatics.ku.edu/TM-align/ | 2007-10-16 | ||||||||||||
| TopMatch | https://topmatch.services.came.sbg.ac.at/ | |||||||||||||
| URMS | http://biozon.org/ftp/software/urms/ | 18-02-1004 | ||||||||||||
| Vorolign | http://www.bio.ifi.lmu.de/Vorolign/ | 1.0.1 |