ProCKSI

= Documentation and Resources Centre for ProCKSI =

== A Decision Support System for Protein (Structure) Comparison, Knowledge, Similarity, and Information ==

 * [wiki:ProjectOverview Project Overview] - Project description, funding, and main collaborators

 * [wiki:DocuPublications Main Publications] - Main ProCKSI related papers, posters, presentations, ... 

 * [wiki:DocuLiterature Further Literature] - Further ProCKSI related literature

== Users Guide ==

 * [wiki:TicketingHowto Ticketing Howto] - Report defects, request enhancements or new features

== Developers Guide ==

  == Installation Guide ==

   * [wiki:InstallationGuide Installation Guide] - How to install and setup ProCKSI

  === System Overview: Hardware, Software ===

   * [wiki:SystemDescription System Overview] - Cluster description, IP addresses, backup, ...

   * [wiki:SoftwareOverview Software Overview]

   * [wiki:UrlEmailForwarding URL and Email Forwarding]

  === Operating System: Installation and Configuration ===

   * [wiki:OperatingSystemInstallation Operating System Installation]

   * [wiki:SystemUpdates System Updates]

   * [wiki:Users User Management]

   * [wiki:Networking Networking] - Network, Firewall, Host Name Resolution

   * [wiki:TimeSynchronisation Time Synchronisation] - NTP

   * [wiki:DataAccess Data Access] - NFS

   * [wiki:JobManagement Job Management] - Queuing System (torque, maui)

   * [wiki:ClusterMonitoring Cluster Monitoring] - Ganglia, JobMonarch

   * [wiki:ClusterBackup Cluster Backup]

  === ProCKSI Server: Installation and Configuration ===

   * [wiki:ExternalSoftware External Software]

   * [wiki:ProcksiFramework ProCKSI Framework]

  === Add-Ons ===

   * [wiki:InstallPDSH Install PDSH] - How to install the Parallel Distributed Shell

 == Development Policies ==

   * [wiki:WikiPolicy Wiki Policy] - Label Wiki pages and attachments correctly

   * [wiki:TicketingPolicy Ticketing Policy] - Handle tickets correctly

   * [wiki:VersioningPolicy Versioning Policy] - Label versions and milestones correctly correctly

   * [wiki:SubversionPolicy Subversion Policy] - Use the SVN repository correctly

   * [wiki:CorporateDesign Corporate Design Policy] - Use logos and styles correctly

 == System, Status and Monitoring ==

   * [http://www.procksi.net/ganglia/ Cluster Monitoring] - Monitoring the cluster, including the queue

   * [wiki:MailingLists Mailing Lists] Mailing lists for developers and users

 == Development Concepts ==

   * [wiki:DataManagement Data Management] - Problem space, dataset, methods, measures, ...

   * [wiki:DataResources Data Resources] - Resources for datasets, similarity comparisons, other information, ...

   * [wiki:DataStandardisation Data Standardisation] - Standardising data from different data sources

 == Third Party Software ==

   * [source:Externals Repository] - Repository for external software

 == ''trac'' Related Links ==

  * TracGuide - Built-in Documentation

  * [http://trac.edgewall.org/ Trac Project] - Trac Open Source Project

  * [http://trac-hacks.org/ Trac Hacks] - Plugins, Macros, ...

  * [http://trac.edgewall.org/wiki/TracFaq Trac FAQ] - Frequently Asked Questions

 For a complete list of local wiki pages, see TitleIndex.

== Restricted Area ==

 * [wiki:Drafts] - Drafts of papers, ...