ProCKSI

= Documentation and Resources Centre for ProCKSI =

== A Decision Support System for Protein (Structure) Comparison, Knowledge, Similarity, and Information ==

 * [wiki:ProjectOverview Project Overview] - Project description, funding, and main collaborators

 * [wiki:DocuPublications Main Publications] - Main ProCKSI related papers, posters, presentations, ... 

 * [wiki:DocuLiterature Further Literature] - Further ProCKSI related literature

== Users Guide ==

 * [wiki:TicketingHowto Ticketing Howto] - Report defects, request enhancements or new features

== Developers Guide ==

 * [wiki:SystemDescription System Overview] - Cluster description, IP addresses, backup, ...

 * [wiki:SoftwareOverview Software Overview]- Operating system, third party software, ...

 * [wiki:UrlEmailForwarding URL and Email Forwarding] 

 * [wiki:ProteinNomenclature Protein Nomenclature]

 * [wiki:SimilarityComparison Similarity Comparison Methods]

 * [wiki:Datasets Datasets] - Datasets and how to label them

 == Teamworking Policies ==

   * [wiki:WikiPolicy Wiki Policy] - How to label and use Wiki pages

   * [wiki:PublicationsPolicy Publications Policy] - How to lable publications for the Wiki and Repository

   * [wiki:TicketingPolicy Ticketing Policy] - How to handle tickets

   * [wiki:VersioningPolicy Versioning Policy] - How to label versions and milestones

   * [wiki:SubversionPolicy Repository Policy] - How to use the SVN repository

   * [wiki:CorporateDesign Corporate Design Policy] - How to use logos and styles correctly

 == System, Status and Monitoring ==

   * [wiki:InstallationGuide Installation Guide] - How to install and setup ProCKSI

   * [http://www.procksi.net/ganglia/ Cluster Monitoring] - Monitoring the cluster, including the queue

   * [wiki:MailingLists Mailing Lists] Mailing lists for developers and users

 == Development Concepts ==

   * [wiki:DataManagement Data Management] - Problem space, dataset, methods, measures, ...

   * [wiki:DataResources Data Resources] - Resources for datasets, similarity comparisons, other information, ...

   * [wiki:DataStandardisation Data Standardisation] - Standardising data from different data sources

   * [wiki:DataStorage Data Storage] - Make results available for the Protein Multiverse

 == ''trac'' Related Links ==

  * TracGuide - Built-in Documentation

  * [http://trac.edgewall.org/ Trac Project] - Trac Open Source Project

  * [http://trac-hacks.org/ Trac Hacks] - Plugins, Macros, ...

  * [http://trac.edgewall.org/wiki/TracFaq Trac FAQ] - Frequently Asked Questions

 For a complete list of local wiki pages, see TitleIndex.

== Restricted Area ==

 * [wiki:secretAuthentication Authentication]

 * [wiki:secretIdeas Ideas]