ProCKSI

h1. Documentation and Resources Centre for [[ProCKSI]] =

 A Decision Support System for Protein (Structure) Comparison, Knowledge, Similarity, and Information ==

* [[ProjectOverview|Project Overview]] - Project description, funding, and main collaborators

* [[DocuPublications|Main Publications]] - Main [[ProCKSI]] related papers, posters, presentations, ... 

* [[DocuLiterature|Further Literature]] - Further [[ProCKSI]] related literature

h2. Users Guide

* [[TicketingHowto|Ticketing Howto]] - Report defects, request enhancements or new features

h2. Developers Guide

* [[SystemDescription|System Overview]] - Cluster description, IP addresses, backup, ...

* [[SoftwareOverview|Software Overview]]- Operating system, third party software, ...

* [[UrlEmailForwarding|URL and Email Forwarding]] 

* [[ProteinNomenclature|Protein Nomenclature]]

* [[SimilarityComparison|Similarity Comparison Methods]]

* [[Datasets|Datasets]] - Datasets and how to label them

 == Teamworking Policies ==

*** [[WikiPolicy|Wiki Policy]] - How to label and use Wiki pages

*** [[PublicationsPolicy|Publications Policy]] - How to lable publications for the Wiki and Repository

*** [[TicketingPolicy|Ticketing Policy]] - How to handle tickets

*** [[VersioningPolicy|Versioning Policy]] - How to label versions and milestones

*** [[SubversionPolicy|Repository Policy]] - How to use the SVN repository

*** [[CorporateDesign|Corporate Design Policy]] - How to use logos and styles correctly

 == System, Status and Monitoring ==

*** [[InstallationGuide|Installation Guide]] - How to install and setup [[ProCKSI]]

*** "Cluster Monitoring":http://www.procksi.net/ganglia/ - Monitoring the cluster, including the queue

*** [[MailingLists|Mailing Lists]] Mailing lists for developers and users

 == Development Concepts ==

*** [[DataManagement|Data Management]] - Problem space, dataset, methods, measures, ...

*** [[DataResources|Data Resources]] - Resources for datasets, similarity comparisons, other information, ...

*** [[DataStandardisation|Data Standardisation]] - Standardising data from different data sources

*** [[DataStorage|Data Storage]] - Make results available for the Protein Multiverse

 == _trac_ Related Links ==

** [[TracGuide]] - Built-in Documentation

** "Trac Project":http://trac.edgewall.org/ - Trac Open Source Project

** "Trac Hacks":http://trac-hacks.org/ - Plugins, Macros, ...

** "Trac FAQ":http://trac.edgewall.org/wiki/TracFaq - Frequently Asked Questions

 For a complete list of local wiki pages, see [[TitleIndex]].

h2. Restricted Area

* [[secretAuthentication|Authentication]]

* [[secretIdeas|Ideas]]