ProCKSI

h1. = Documentation and Resources Centre for [[ProCKSI]] ProCKSI =

== A Decision Support System for Protein (Structure) Comparison, Knowledge, Similarity, and Information ==



* [[ProjectOverview|Project Overview]] [wiki:ProjectOverview Project Overview] - Project description, funding, and main collaborators

* [[DocuPublications|Main Publications]] [wiki:DocuPublications Main Publications] - Main [[ProCKSI]] ProCKSI related papers, posters, presentations, ...

* [[DocuLiterature|Further Literature]] [wiki:DocuLiterature Further Literature] - Further [[ProCKSI]] ProCKSI related literature

h2.

== Users Guide

==
* [[TicketingHowto|Ticketing Howto]] [wiki:TicketingHowto Ticketing Howto] - Report defects, request enhancements or new features

h2.

== Developers Guide

==
* [[SystemDescription|System Overview]] [wiki:SystemDescription System Overview] - Cluster description, IP addresses, backup, ...

* [[SoftwareOverview|Software Overview]]- [wiki:SoftwareOverview Software Overview]- Operating system, third party software, ...

* [[UrlEmailForwarding|URL [wiki:UrlEmailForwarding URL and Email Forwarding]]
Forwarding]
* [[ProteinNomenclature|Protein Nomenclature]]
[wiki:ProteinNomenclature Protein Nomenclature]
* [[SimilarityComparison|Similarity [wiki:SimilarityComparison Similarity Comparison Methods]]
Methods]
* [[Datasets|Datasets]] [wiki:Datasets Datasets] - Datasets and how to label them

== Teamworking Policies ==
*** [[WikiPolicy|Wiki Policy]]
* [wiki:WikiPolicy Wiki Policy] - How to label and use Wiki pages
*** [[PublicationsPolicy|Publications Policy]]
* [wiki:PublicationsPolicy Publications Policy] - How to lable publications for the Wiki and Repository
*** [[TicketingPolicy|Ticketing Policy]]
* [wiki:TicketingPolicy Ticketing Policy] - How to handle tickets
*** [[VersioningPolicy|Versioning Policy]]
* [wiki:VersioningPolicy Versioning Policy] - How to label versions and milestones
*** [[SubversionPolicy|Repository Policy]]
* [wiki:SubversionPolicy Repository Policy] - How to use the SVN repository
*** [[CorporateDesign|Corporate
* [wiki:CorporateDesign Corporate Design Policy]] Policy] - How to use logos and styles correctly

== System, Status and Monitoring ==
*** [[InstallationGuide|Installation Guide]]
* [wiki:InstallationGuide Installation Guide] - How to install and setup [[ProCKSI]]
*** "Cluster Monitoring":http://www.procksi.net/ganglia/ ProCKSI
* [http://www.procksi.net/ganglia/ Cluster Monitoring] - Monitoring the cluster, including the queue
*** [[MailingLists|Mailing Lists]]
* [wiki:MailingLists Mailing Lists] Mailing lists for developers and users

== Development Concepts ==
*** [[DataManagement|Data Management]]
* [wiki:DataManagement Data Management] - Problem space, dataset, methods, measures, ...
*** [[DataResources|Data Resources]]
* [wiki:DataResources Data Resources] - Resources for datasets, similarity comparisons, other information, ...
*** [[DataStandardisation|Data Standardisation]]
* [wiki:DataStandardisation Data Standardisation] - Standardising data from different data sources
*** [[DataStorage|Data Storage]]
* [wiki:DataStorage Data Storage] - Make results available for the Protein Multiverse

== _trac_ ''trac'' Related Links ==
** [[TracGuide]]
* TracGuide - Built-in Documentation
** "Trac Project":http://trac.edgewall.org/
* [http://trac.edgewall.org/ Trac Project] - Trac Open Source Project
** "Trac Hacks":http://trac-hacks.org/
* [http://trac-hacks.org/ Trac Hacks] - Plugins, Macros, ...
** "Trac FAQ":http://trac.edgewall.org/wiki/TracFaq
* [http://trac.edgewall.org/wiki/TracFaq Trac FAQ] - Frequently Asked Questions

For a complete list of local wiki pages, see [[TitleIndex]].

h2. TitleIndex.

== Restricted Area

==
* [[secretAuthentication|Authentication]]
[wiki:secretAuthentication Authentication]
* [[secretIdeas|Ideas]] [wiki:secretIdeas Ideas]