ProCKSI

h1. Documentation and Resources Centre for [[ProCKSI]]

h2. =
A Decision Support System for Protein (Structure) Comparison, Knowledge, Similarity, and Information ==

* [[ProjectOverview|Project Overview]] - Project description, funding, and main collaborators
* [[DocuPublications|Main Publications]] - Main [[ProCKSI]] related papers, posters, presentations, ...
* [[DocuLiterature|Further Literature]] - Further [[ProCKSI]] related literature



h2. Users Guide



* [[TicketingHowto|Ticketing Howto]] - Report defects, request enhancements or new features



h2. Developers Guide



* [[SystemDescription|System Overview]] - Cluster description, IP addresses, backup, ...
* [[SoftwareOverview|Software Overview]]- Operating system, third party software, ...
* [[UrlEmailForwarding|URL and Email Forwarding]]
* [[ProteinNomenclature|Protein Nomenclature]]
* [[SimilarityComparison|Similarity Comparison Methods]]
* [[Datasets|Datasets]] - Datasets and how to label them

h3.

== Teamworking Policies

* ==
*** [[WikiPolicy|Wiki Policy]] - How to label and use Wiki pages
* *** [[PublicationsPolicy|Publications Policy]] - How to lable publications for the Wiki and Repository
* *** [[TicketingPolicy|Ticketing Policy]] - How to handle tickets
* *** [[VersioningPolicy|Versioning Policy]] - How to label versions and milestones
* *** [[SubversionPolicy|Repository Policy]] - How to use the SVN repository
* *** [[CorporateDesign|Corporate Design Policy]] - How to use logos and styles correctly

h3.

== System, Status and Monitoring

* ==
*** [[InstallationGuide|Installation Guide]] - How to install and setup [[ProCKSI]]
* *** "Cluster Monitoring":http://www.procksi.net/ganglia/ - Monitoring the cluster, including the queue
* *** [[MailingLists|Mailing Lists]] Mailing lists for developers and users

h3.

== Development Concepts

* ==
*** [[DataManagement|Data Management]] - Problem space, dataset, methods, measures, ...
* *** [[DataResources|Data Resources]] - Resources for datasets, similarity comparisons, other information, ...
* *** [[DataStandardisation|Data Standardisation]] - Standardising data from different data sources
* *** [[DataStorage|Data Storage]] - Make results available for the Protein Multiverse



== _trac_ Related Links ==
** [[TracGuide]] - Built-in Documentation
** "Trac Project":http://trac.edgewall.org/ - Trac Open Source Project
** "Trac Hacks":http://trac-hacks.org/ - Plugins, Macros, ...
** "Trac FAQ":http://trac.edgewall.org/wiki/TracFaq - Frequently Asked Questions

For a complete list of local wiki pages, see [[TitleIndex]].

h2. Restricted Area



* [[secretAuthentication|Authentication]]
* [[secretIdeas|Ideas]]