ProCKSI

= Papers =

2008

A.A. Shah, G. Folino, D. Barthel, and N. Krasnogor ([ publisher])br
'''Performance Evaluation of PSC Algorithms under INtegrated Resource Management Environment for MPI Jobs'''br
In '' Proceedings of International Symposium on Parallel and Distributed Applications (ISPA2008)''.br
Sydney, Dec 10-12, 2008.

G. Folino, A.A. Shah, D. Barthel, and N. Krasnogor ([http://www.allhands.org.uk/2008/programme/index.cfm publisher])br
'''Towards a Distributed Framework for Protein (Strucutre) Comparison, Knowledge, Similarity and Information (ProCKSI).'''br
In '' Proceedings of UK eScience All Hands Meeting 2008 (AHM 2008)''.br
Edinburgh, Sep.8-11, 2008.

M.T. Oakley, D. Barthel, Y. Bykov, J.M. Garibaldi, E.K. Burke, N. Krasnogor, and J.D. Hirst ([http://www.ingentaconnect.com/content/ben/cpps/2008/00000009/00000003/art00006 publisher])br
'''Search Strategies in Structural Bioinformatics.'''br
''Current Protein and Peptide Science'', 2008, 9(3), 260-274.

A.A. Shah, D. Barthel, P. Łukasiak, J. Błażewicz, and N. Krasnogor ([http://www.ingentaconnect.com/search/article?title=web+and+grid&title_type=tka&author=Krasnogor&journal=current+bioinformatics&journal_type=words&volume=3&issue=1&year_from=2003&year_to=2008&database=1&pageSize=20&index=1 publisher])br
'''Web & Grid Technologies in Bioinformatics, Computational Biology and Systems Biology: A Review.''' br
''Current Bioinformatics'', 3, 10-31, 2008.

2007
D. Barthel, J.D. Hirst, J. Błażewicz, E.K. Burke, and N. Krasnogor. ([http://www.biomedcentral.com/1471-2105/8/416/abstract publisher])br
'''The ProCKSI Server: A Decision Support System for Protein (Structure) Comparison, Knowledge, Similarity and Information.''' br
''BMC Bioinformatics'' 2007, 8, 416.

A.A. Shah, D. Barthel, and N. Krasnogor ([http://www.springerlink.com/content/90n46423p200502r/ publisher], [http://dblp.uni-trier.de/rec/bibtex/conf/ispa/ShahBK07 bibtex])br
''' Grid and Distributed Public Computing Schemes for Structural Proteomics: A Short Overview.'''br
In P. Thulasiraman, X. He, T. Li-Xu, M. Denko, R.K. Thulasiram, and L.T. Yang (Eds.), ''Frontiers of High Performance Computing and Networking ISPA 2007 Workshops''. Lecture Notes in Computer Science, 4743, Springer, 424-434, 2007.

A.A. Shah, D. Barthel, and N. Krasnogorbr
'''Protein Structure Comparison, Analysis and Clustering: An overview of the ProCKSI Decision Support System.'''br
In ''Proceedings of the 4th International Biotechnology Symposium (IBS 2007)''.br
University of Sindh, Pakistan, Nov.4-8, 2007.

=== 2006 ===
D. Barthel, J.D. Hirst, J. Błażewicz, and N. Krasnogorbr
'''ProCKSI: A Metaserver for Protein Comparison using Kolmogorov and other Similarity Measures.'''br
In ''Late Breaking Papers. European Conference on Computational Biology'', 2006.br
Eilat, Israel, 2006. Peer reviewed CDROM publication.

=== 2005 ===
D.A. Pelta, N. Krasnogor, C. Bousono-Calzon, J.L. Verdegay, J. Hirst, and E.K. Burke ([http://dx.doi.org/10.1016/j.fss.2004.10.017 publisher])br
'''A fuzzy sets based generalization of contact maps for the overlap of protein structures.'''br
''Journal of Fuzzy Sets and Systems'', 152, 103-123, 2005.

D.A. Pelta, J.R. Gonzales, and N. Krasnogorbr
'''Protein structure comparison through fuzzy contact maps and the universal similarity metric.'''br
In ''Fourth Conference of the European Society for Fuzzy Logic and Technology and 11 Recontres Francophones sur la Logique Floue et ses Applications (EUSFLAT-LFA'05)'', 1124-1129, Barcelona, Spain, 2005.

=== 2004 ===
N. Krasnogor ([http://dx.doi.org/10.1023/B:GENP.0000023687.41210.d7 publisher])br
'''Self-generating metaheuristics in bioinformatics: the protein structure comparison case.'''br
''Genetic Programming and Evolvable Machines'', 5, 181-201, 2004.

N. Krasnogor and D.A. Pelta ([http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/7/1015 publisher])br
'''Measuring the similarity of protein structures by means of the universal similarity metric.'''br
''Bioinformatics'', 20, 1015-1021, 2004.

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