DocuPapers » History » Version 12
Version 11 (Anonymous, 07/14/2008 11:01 AM) → Version 12/14 (Anonymous, 12/15/2008 07:07 PM)
= Papers =
== 2008 ==
A.A. Shah, G. Folino, D. Barthel, and N. Krasnogor ([ publisher])[[br]]
'''Performance Evaluation of PSC Algorithms under INtegrated Resource Management Environment for MPI Jobs'''[[br]]
In '' Proceedings of International Symposium on Parallel and Distributed Applications (ISPA2008)''.[[br]]
Sydney, Dec 10-12, 2008.
G. Folino, A.A. Shah, D. Barthel, and N. Krasnogor ([http://www.allhands.org.uk/2008/programme/index.cfm publisher])[[br]] Krasnogor[[br]]
'''Towards a Distributed Framework for Protein (Strucutre) Comparison, Knowledge, Similarity and Information (ProCKSI).'''[[br]]
In '' Proceedings of UK eScience All Hands Meeting 2008 (AHM 2008)''.[[br]]
Edinburgh, Sep.8-11, 2008.
M.T. Oakley, D. Barthel, Y. Bykov, J.M. Garibaldi, E.K. Burke, N. Krasnogor, and J.D. Hirst ([http://www.ingentaconnect.com/content/ben/cpps/2008/00000009/00000003/art00006 publisher])[[br]]
'''Search Strategies in Structural Bioinformatics.'''[[br]]
''Current Protein and Peptide Science'', 2008, 9(3), 260-274.
A.A. Shah, D. Barthel, P. Łukasiak, J. Błażewicz, and N. Krasnogor ([http://www.ingentaconnect.com/search/article?title=web+and+grid&title_type=tka&author=Krasnogor&journal=current+bioinformatics&journal_type=words&volume=3&issue=1&year_from=2003&year_to=2008&database=1&pageSize=20&index=1 publisher])[[br]]
'''Web & Grid Technologies in Bioinformatics, Computational Biology and Systems Biology: A Review.''' [[br]]
''Current Bioinformatics'', 3, 10-31, 2008.
== 2007 ==
D. Barthel, J.D. Hirst, J. Błażewicz, E.K. Burke, and N. Krasnogor. ([http://www.biomedcentral.com/1471-2105/8/416/abstract publisher])[[br]]
'''The ProCKSI Server: A Decision Support System for Protein (Structure) Comparison, Knowledge, Similarity and Information.''' [[br]]
''BMC Bioinformatics'' 2007, 8, 416.
A.A. Shah, D. Barthel, and N. Krasnogor ([http://www.springerlink.com/content/90n46423p200502r/ publisher], [http://dblp.uni-trier.de/rec/bibtex/conf/ispa/ShahBK07 bibtex])[[br]]
''' Grid and Distributed Public Computing Schemes for Structural Proteomics: A Short Overview.'''[[br]]
In P. Thulasiraman, X. He, T. Li-Xu, M. Denko, R.K. Thulasiram, and L.T. Yang (Eds.), ''Frontiers of High Performance Computing and Networking ISPA 2007 Workshops''. Lecture Notes in Computer Science, 4743, Springer, 424-434, 2007.
A.A. Shah, D. Barthel, and N. Krasnogor[[br]]
'''Protein Structure Comparison, Analysis and Clustering: An overview of the ProCKSI Decision Support System.'''[[br]]
In ''Proceedings of the 4th International Biotechnology Symposium (IBS 2007)''.[[br]]
University of Sindh, Pakistan, Nov.4-8, 2007.
=== 2006 ===
D. Barthel, J.D. Hirst, J. Błażewicz, and N. Krasnogor[[br]]
'''ProCKSI: A Metaserver for Protein Comparison using Kolmogorov and other Similarity Measures.'''[[br]]
In ''Late Breaking Papers. European Conference on Computational Biology'', 2006.[[br]]
Eilat, Israel, 2006. Peer reviewed CDROM publication.
=== 2005 ===
D.A. Pelta, N. Krasnogor, C. Bousono-Calzon, J.L. Verdegay, J. Hirst, and E.K. Burke ([http://dx.doi.org/10.1016/j.fss.2004.10.017 publisher])[[br]]
'''A fuzzy sets based generalization of contact maps for the overlap of protein structures.'''[[br]]
''Journal of Fuzzy Sets and Systems'', 152, 103-123, 2005.
D.A. Pelta, J.R. Gonzales, and N. Krasnogor[[br]]
'''Protein structure comparison through fuzzy contact maps and the universal similarity metric.'''[[br]]
In ''Fourth Conference of the European Society for Fuzzy Logic and Technology and 11 Recontres Francophones sur la Logique Floue et ses Applications (EUSFLAT-LFA'05)'', 1124-1129, Barcelona, Spain, 2005.
=== 2004 ===
N. Krasnogor ([http://dx.doi.org/10.1023/B:GENP.0000023687.41210.d7 publisher])[[br]]
'''Self-generating metaheuristics in bioinformatics: the protein structure comparison case.'''[[br]]
''Genetic Programming and Evolvable Machines'', 5, 181-201, 2004.
N. Krasnogor and D.A. Pelta ([http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/7/1015 publisher])[[br]]
'''Measuring the similarity of protein structures by means of the universal similarity metric.'''[[br]]
''Bioinformatics'', 20, 1015-1021, 2004.
----
== 2008 ==
A.A. Shah, G. Folino, D. Barthel, and N. Krasnogor ([ publisher])[[br]]
'''Performance Evaluation of PSC Algorithms under INtegrated Resource Management Environment for MPI Jobs'''[[br]]
In '' Proceedings of International Symposium on Parallel and Distributed Applications (ISPA2008)''.[[br]]
Sydney, Dec 10-12, 2008.
G. Folino, A.A. Shah, D. Barthel, and N. Krasnogor ([http://www.allhands.org.uk/2008/programme/index.cfm publisher])[[br]] Krasnogor[[br]]
'''Towards a Distributed Framework for Protein (Strucutre) Comparison, Knowledge, Similarity and Information (ProCKSI).'''[[br]]
In '' Proceedings of UK eScience All Hands Meeting 2008 (AHM 2008)''.[[br]]
Edinburgh, Sep.8-11, 2008.
M.T. Oakley, D. Barthel, Y. Bykov, J.M. Garibaldi, E.K. Burke, N. Krasnogor, and J.D. Hirst ([http://www.ingentaconnect.com/content/ben/cpps/2008/00000009/00000003/art00006 publisher])[[br]]
'''Search Strategies in Structural Bioinformatics.'''[[br]]
''Current Protein and Peptide Science'', 2008, 9(3), 260-274.
A.A. Shah, D. Barthel, P. Łukasiak, J. Błażewicz, and N. Krasnogor ([http://www.ingentaconnect.com/search/article?title=web+and+grid&title_type=tka&author=Krasnogor&journal=current+bioinformatics&journal_type=words&volume=3&issue=1&year_from=2003&year_to=2008&database=1&pageSize=20&index=1 publisher])[[br]]
'''Web & Grid Technologies in Bioinformatics, Computational Biology and Systems Biology: A Review.''' [[br]]
''Current Bioinformatics'', 3, 10-31, 2008.
== 2007 ==
D. Barthel, J.D. Hirst, J. Błażewicz, E.K. Burke, and N. Krasnogor. ([http://www.biomedcentral.com/1471-2105/8/416/abstract publisher])[[br]]
'''The ProCKSI Server: A Decision Support System for Protein (Structure) Comparison, Knowledge, Similarity and Information.''' [[br]]
''BMC Bioinformatics'' 2007, 8, 416.
A.A. Shah, D. Barthel, and N. Krasnogor ([http://www.springerlink.com/content/90n46423p200502r/ publisher], [http://dblp.uni-trier.de/rec/bibtex/conf/ispa/ShahBK07 bibtex])[[br]]
''' Grid and Distributed Public Computing Schemes for Structural Proteomics: A Short Overview.'''[[br]]
In P. Thulasiraman, X. He, T. Li-Xu, M. Denko, R.K. Thulasiram, and L.T. Yang (Eds.), ''Frontiers of High Performance Computing and Networking ISPA 2007 Workshops''. Lecture Notes in Computer Science, 4743, Springer, 424-434, 2007.
A.A. Shah, D. Barthel, and N. Krasnogor[[br]]
'''Protein Structure Comparison, Analysis and Clustering: An overview of the ProCKSI Decision Support System.'''[[br]]
In ''Proceedings of the 4th International Biotechnology Symposium (IBS 2007)''.[[br]]
University of Sindh, Pakistan, Nov.4-8, 2007.
=== 2006 ===
D. Barthel, J.D. Hirst, J. Błażewicz, and N. Krasnogor[[br]]
'''ProCKSI: A Metaserver for Protein Comparison using Kolmogorov and other Similarity Measures.'''[[br]]
In ''Late Breaking Papers. European Conference on Computational Biology'', 2006.[[br]]
Eilat, Israel, 2006. Peer reviewed CDROM publication.
=== 2005 ===
D.A. Pelta, N. Krasnogor, C. Bousono-Calzon, J.L. Verdegay, J. Hirst, and E.K. Burke ([http://dx.doi.org/10.1016/j.fss.2004.10.017 publisher])[[br]]
'''A fuzzy sets based generalization of contact maps for the overlap of protein structures.'''[[br]]
''Journal of Fuzzy Sets and Systems'', 152, 103-123, 2005.
D.A. Pelta, J.R. Gonzales, and N. Krasnogor[[br]]
'''Protein structure comparison through fuzzy contact maps and the universal similarity metric.'''[[br]]
In ''Fourth Conference of the European Society for Fuzzy Logic and Technology and 11 Recontres Francophones sur la Logique Floue et ses Applications (EUSFLAT-LFA'05)'', 1124-1129, Barcelona, Spain, 2005.
=== 2004 ===
N. Krasnogor ([http://dx.doi.org/10.1023/B:GENP.0000023687.41210.d7 publisher])[[br]]
'''Self-generating metaheuristics in bioinformatics: the protein structure comparison case.'''[[br]]
''Genetic Programming and Evolvable Machines'', 5, 181-201, 2004.
N. Krasnogor and D.A. Pelta ([http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/7/1015 publisher])[[br]]
'''Measuring the similarity of protein structures by means of the universal similarity metric.'''[[br]]
''Bioinformatics'', 20, 1015-1021, 2004.
----