ProCKSI

h1. = Papers

h2. =

== 2008

==

A.A. Shah, G. Folino, D. Barthel, and N. Krasnogor ([ publisher])[[br]]
*Performance '''Performance Evaluation of PSC Algorithms under INtegrated Resource Management Environment for MPI Jobs*[[br]] Jobs'''[[br]]
In _ '' Proceedings of International Symposium on Parallel and Distributed Applications (ISPA2008)_.[[br]] (ISPA2008)''.[[br]]
Sydney, Dec 10-12, 2008.

G. Folino, A.A. Shah, D. Barthel, and N. Krasnogor ("publisher":http://www.allhands.org.uk/2008/programme/index.cfm)[[br]] ([http://www.allhands.org.uk/2008/programme/index.cfm publisher])[[br]]
*Towards '''Towards a Distributed Framework for Protein (Strucutre) Comparison, Knowledge, Similarity and Information (ProCKSI).*[[br]] (ProCKSI).'''[[br]]
In _ '' Proceedings of UK eScience All Hands Meeting 2008 (AHM 2008)_.[[br]] 2008)''.[[br]]
Edinburgh, Sep.8-11, 2008.

M.T. Oakley, D. Barthel, Y. Bykov, J.M. Garibaldi, E.K. Burke, N. Krasnogor, and J.D. Hirst ("publisher":http://www.ingentaconnect.com/content/ben/cpps/2008/00000009/00000003/art00006)[[br]] ([http://www.ingentaconnect.com/content/ben/cpps/2008/00000009/00000003/art00006 publisher])[[br]]
*Search '''Search Strategies in Structural Bioinformatics.*[[br]] Bioinformatics.'''[[br]]
_Current ''Current Protein and Peptide Science_, Science'', 2008, 9(3), 260-274.

A.A. Shah, D. Barthel, P. Łukasiak, J. Błażewicz, and N. Krasnogor ("publisher":http://www.ingentaconnect.com/search/article?title=web+and+grid&title_type=tka&author=Krasnogor&journal=current+bioinformatics&journal_type=words&volume=3&issue=1&year_from=2003&year_to=2008&database=1&pageSize=20&index=1)[[br]] ([http://www.ingentaconnect.com/search/article?title=web+and+grid&title_type=tka&author=Krasnogor&journal=current+bioinformatics&journal_type=words&volume=3&issue=1&year_from=2003&year_to=2008&database=1&pageSize=20&index=1 publisher])[[br]]
*Web '''Web & Grid Technologies in Bioinformatics, Computational Biology and Systems Biology: A Review.* Review.''' [[br]]
_Current Bioinformatics_, ''Current Bioinformatics'', 3, 10-31, 2008.

h2.

== 2007

==
D. Barthel, J.D. Hirst, J. Błażewicz, E.K. Burke, and N. Krasnogor. ("publisher":http://www.biomedcentral.com/1471-2105/8/416/abstract)[[br]] ([http://www.biomedcentral.com/1471-2105/8/416/abstract publisher])[[br]]
*The [[ProCKSI]] '''The ProCKSI Server: A Decision Support System for Protein (Structure) Comparison, Knowledge, Similarity and Information.* Information.''' [[br]]
_BMC Bioinformatics_ ''BMC Bioinformatics'' 2007, 8, 416.

A.A. Shah, D. Barthel, and N. Krasnogor ("publisher":http://www.springerlink.com/content/90n46423p200502r/, "bibtex":http://dblp.uni-trier.de/rec/bibtex/conf/ispa/ShahBK07)[[br]] ([http://www.springerlink.com/content/90n46423p200502r/ publisher], [http://dblp.uni-trier.de/rec/bibtex/conf/ispa/ShahBK07 bibtex])[[br]]
* ''' Grid and Distributed Public Computing Schemes for Structural Proteomics: A Short Overview.*[[br]] Overview.'''[[br]]
In P. Thulasiraman, X. He, T. Li-Xu, M. Denko, R.K. Thulasiram, and L.T. Yang (Eds.), _Frontiers ''Frontiers of High Performance Computing and Networking ISPA 2007 Workshops_. Workshops''. Lecture Notes in Computer Science, 4743, Springer, 424-434, 2007.

A.A. Shah, D. Barthel, and N. Krasnogor[[br]]
*Protein '''Protein Structure Comparison, Analysis and Clustering: An overview of the [[ProCKSI]] ProCKSI Decision Support System.*[[br]] System.'''[[br]]
In _Proceedings ''Proceedings of the 4th International Biotechnology Symposium (IBS 2007)_.[[br]] 2007)''.[[br]]
University of Sindh, Pakistan, Nov.4-8, 2007.

h3.

=== 2006

===
D. Barthel, J.D. Hirst, J. Błażewicz, and N. Krasnogor[[br]]
*ProCKSI: '''ProCKSI: A Metaserver for Protein Comparison using Kolmogorov and other Similarity Measures.*[[br]] Measures.'''[[br]]
In _Late ''Late Breaking Papers. European Conference on Computational Biology_, Biology'', 2006.[[br]]
Eilat, Israel, 2006. Peer reviewed CDROM publication.

h3.

=== 2005

===
D.A. Pelta, N. Krasnogor, C. Bousono-Calzon, J.L. Verdegay, J. Hirst, and E.K. Burke ("publisher":http://dx.doi.org/10.1016/j.fss.2004.10.017)[[br]] ([http://dx.doi.org/10.1016/j.fss.2004.10.017 publisher])[[br]]
*A '''A fuzzy sets based generalization of contact maps for the overlap of protein structures.*[[br]] structures.'''[[br]]
_Journal ''Journal of Fuzzy Sets and Systems_, Systems'', 152, 103-123, 2005.

D.A. Pelta, J.R. Gonzales, and N. Krasnogor[[br]]
*Protein '''Protein structure comparison through fuzzy contact maps and the universal similarity metric.*[[br]] metric.'''[[br]]
In _Fourth ''Fourth Conference of the European Society for Fuzzy Logic and Technology and 11 Recontres Francophones sur la Logique Floue et ses Applications (EUSFLAT-LFA'05)_, (EUSFLAT-LFA'05)'', 1124-1129, Barcelona, Spain, 2005.

h3.

=== 2004

===
N. Krasnogor ("publisher":http://dx.doi.org/10.1023/B:GENP.0000023687.41210.d7)[[br]] ([http://dx.doi.org/10.1023/B:GENP.0000023687.41210.d7 publisher])[[br]]
*Self-generating '''Self-generating metaheuristics in bioinformatics: the protein structure comparison case.*[[br]] case.'''[[br]]
_Genetic ''Genetic Programming and Evolvable Machines_, Machines'', 5, 181-201, 2004.

N. Krasnogor and D.A. Pelta ("publisher":http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/7/1015)[[br]] ([http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/7/1015 publisher])[[br]]
*Measuring '''Measuring the similarity of protein structures by means of the universal similarity metric.*[[br]] metric.'''[[br]]
_Bioinformatics_, ''Bioinformatics'', 20, 1015-1021, 2004.

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