ProCKSI

= Publications =

This page provides access to all ProCKSI related '''Papers''', '''Posters''', '''Presentations''', '''Demonstrations''', and '''Tutorials'''.[[br]]

When adding new publications, please refer to the [wiki:WikiPolicy Wiki Policy] on how files should be named.

== Papers ==

  ||2007|| 

  * '''A.A. Shah, D. Barthel, and N. Krasnogor'''[[br]]

    Grid and distributed public computing schemes for structural proteomics.[[br]]

    In P. Thulasiraman, X. He, T. Li-Xu, M. Denko, R.K. Thulasiram, and L.T. Yang, editors, ''Proceedings of the 5th International Symposium on Parallel and Distributed Processing and Applications (ISPA'07)''.[[br]]

    Lecture Notes in Computer Science. Springer (to appear), 2007.

  ||2006||

  * '''D. Barthel, J.D. Hirst, J. Blacewicz, and N. Krasnogor'''[[br]] 

    ProCKSI: A Metaserver for Protein Comparison using Kolmogorov and other Similarity Measures.[[br]]

    In ''Late Breaking Papers. European Conference on Computational Biology'', 2006.[[br]]

    Eilat, Israel, 2006. Peer reviewed CDROM publication.

  ||2005||

  * '''D.A. Pelta, N. Krasnogor, C. Bousono-Calzon, J.L. Verdegay, J. Hirst, and E.K. Burke'''[[br]]

    A fuzzy sets based generalization of contact maps for the overlap of protein structures.[[br]]

    ''Journal of Fuzzy Sets and Systems'', 152(2):103-123, 2005.

  * '''D.A. Pelta, J.R. Gonzales, and N. Krasnogor'''[[br]]

    Protein structure comparison through fuzzy contact maps and the universal similarity metric.[[br]] 

    In ''Fourth Conference of the European Society for Fuzzy Logic and Technology and 11 Recontres Francophones sur la Logique Floue et ses Applications (EUSFLAT-LFA'05)'', 1124-1129, Barcelona, Spain, 2005.

  ||2004||

  * '''N. Krasnogor'''[[br]]

    Self-generating metaheuristics in bioinformatics: the protein structure comparison case.[[br]]

    ''Genetic Programming and Evolvable Machines'', 5(2):181-201, 2004.

  * '''N. Krasnogor and D.A. Pelta'''[[br]]

    Measuring the similarity of protein structures by means of the universal similarity metric.[[br]]

    ''Bioinformatics'', 20(7):1015-1021, 2004.

== Posters ==

 ||'''Year''' ||'''Conference/Event'''||'''Main Author'''         || '''Download as'''

 ||2007 ||European Conference on Computational Biology (ECCB'06), Eilat, Israel||Daniel Barthel|| [https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Poster_2007_ECCB06_DanielBarthel.ppt?format=raw PPT]

 ||2006 ||All Hands Meeting (AHM'06), Nottingham, UK||Daniel Barthel|| [https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Poster_2006_AHM_DanielBarthel.ppt PPT]

 ||2005 ||Grantholders Workshop, Manchester, UK||Daniel Barthel|| [https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Poster_2005_GrantholdersWorkshop_DanielBarthel.ppt PPT]

== Presentations ==

 ||'''Year''' ||'''Conference/Event''' ||'''Topic/Keywords'''         || '''Main Presentator'''         || '''Download as'''

 ||2007       ||Research Away Day (RAD'07), Nottingham, UK         || ||Daniel Barthel|| [https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Presentation_2007_RAD_DanielBarthel.ppt?format=raw PPT]

 ||2007       ||ASAP, Next Generation Decision Support -  EPSRC Evaluation, Nottingham, UK         || ||Daniel Barthel|| [https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Presentation_2007_ASAP_NGDS-Evaluation_DanielBarthel.ppt?format=raw PPT]

 ||2007       ||ASAP, Next Generation Decision Support - Workshop 1, Nottingham, UK         || ||Daniel Barthel|| [https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Presentation_2007_ASAP_NGDS-Workshop1_DanielBarthel.ppt?format=raw PPT]

 ||2007       ||ASAP, Journal Club, Nottingham, UK         || ||Daniel Barthel|| [https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Presentation_2007_ASAP_JournalClub_DanielBarthel.ppt?format=raw PPT]

 ||2007       ||ASAP, Group Seminar, Nottingham, UK         || ||Daniel Barthel|| [https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Presentation_2007_ASAP_DanielBarthel.ppt?format=raw PPT]

 ||2007       ||ASAP, CASP Workshop, Nottingham, UK         || ||Daniel Barthel|| [https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Presentation_2007_ASAP_CASP_DanielBarthel.ppt?format=raw PPT]

 ||2006       ||CNIO, Group Seminar, Madrid, Spain         || ||Daniel Barthel|| [https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Presentation_2006_CNIO_DanielBarthel.ppt?format=raw PPT]

 ||2006       ||East Midlands Proteomics Workshop (EMPW'06), Nottingham, UK         || ||Daniel Barthel|| [https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Presentation_2006_EMPW_DanielBarthel.ppt?format=raw PPT]

 ||2006       ||Research Away Day (RAD'06), Nottingham, UK         || ||Daniel Barthel|| [https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Presentation_2006_RAD_DanielBarthel.ppt?format=raw PPT]

 ||2006       ||ASAP, Group Seminar, Nottingham, UK         || ||Daniel Barthel|| [https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Presentation_2006_ASAP_DanielBarthel.ppt?format=raw PPT]

 ||2006       ||ASAP, CASP Workshop, Nottingham, UK         || ||Daniel Barthel|| [https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Presentation_2006_ASAP_CASP_DanielBarthel.ppt?format=raw PPT]

 ||2006       ||School of Chemistry, Group Seminar, Nottingham, UK         || ||Daniel Barthel|| [https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Presentation_2006_SchoolOfChemistry_DanielBarthel.ppt?format=raw PPT]

== Demonstrations ==

 ||'''Year''' ||'''Conference/Event'''||'''Main Demonstrator'''         || '''Download as'''

 ||2006       ||All Hands Meeting (AHM'06), Nottingham, UK         ||Daniel Barthel      || Part 1:  [https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Demonstration_2006_AHM_Part1_DanielBarthel.ppt?format=raw PPT]

 ||           ||& School of Chemistry, Group Seminar, Nottingham, UK ||                    || Part 2: [https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Demonstration_2006_AHM_Part2_DanielBarthel.ppt?format=raw PPT]

 ||2005       ||Grantholders Workshop, Manchester, UK         ||Daniel Barthel      ||

== Tutorials ==

 ||'''Year''' ||'''Conference/Event'''         ||'''Topic / Keywords''' ||'''Main Tutor'''         || '''Download as'''

 ||2006       ||ASAP, Journal Club, Nottingham, UK ||Cluster Analysis and Validation||Daniel Barthel ||[https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Tutorial_2006_ASAP_ClusterAnalysis_DanielBarthel.ppt PPT]