ProCKSI

= Publications =

This page provides access to all ProCKSI related '''Papers''', '''Posters''', '''Presentations''', '''Demonstrations''', and '''Tutorials'''.br
When adding new publications, please refer to the [wiki:WikiPolicy Wiki Policy] on how files should be named.

Papers

||2007|| * '''A.A. Shah, D. Barthel, and N. Krasnogor'''br
Grid and distributed public computing schemes for structural proteomics.br
In P. Thulasiraman, X. He, T. Li-Xu, M. Denko, R.K. Thulasiram, and L.T. Yang, editors, ''Proceedings of the 5th International Symposium on Parallel and Distributed Processing and Applications (ISPA'07)''.br
Lecture Notes in Computer Science. Springer (to appear), 2007.

||2006|| * '''D. Barthel, J.D. Hirst, J. Blacewicz, and N. Krasnogor'''br
ProCKSI: A Metaserver for Protein Comparison using Kolmogorov and other Similarity Measures.br
In ''Late Breaking Papers. European Conference on Computational Biology'', 2006.br
Eilat, Israel, 2006. Peer reviewed CDROM publication.

||2005|| * '''D.A. Pelta, N. Krasnogor, C. Bousono-Calzon, J.L. Verdegay, J. Hirst, and E.K. Burke'''br
A fuzzy sets based generalization of contact maps for the overlap of protein structures.br
''Journal of Fuzzy Sets and Systems'', 152(2):103-123, 2005. * '''D.A. Pelta, J.R. Gonzales, and N. Krasnogor'''br
Protein structure comparison through fuzzy contact maps and the universal similarity metric.br
In ''Fourth Conference of the European Society for Fuzzy Logic and Technology and 11 Recontres Francophones sur la Logique Floue et ses Applications (EUSFLAT-LFA'05)'', 1124-1129, Barcelona, Spain, 2005.

||2004|| * '''N. Krasnogor'''br
Self-generating metaheuristics in bioinformatics: the protein structure comparison case.br
''Genetic Programming and Evolvable Machines'', 5(2):181-201, 2004. * '''N. Krasnogor and D.A. Pelta'''br
Measuring the similarity of protein structures by means of the universal similarity metric.br
''Bioinformatics'', 20(7):1015-1021, 2004.

Posters

||2007|| * '''D. Barthel, J.D. Hirst, and N. Krasnogor'''
([https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Poster_2007_ECCB06_DanielBarthel.ppt?format=raw PPT])
br
ProCKSi: A Meta-Server for Protein Structure Comparisonbr
European Conference on Computational Biology (ECCB'06), Eilat, Israelbr

||2006|| * '''D. Barthel, J.D. Hirst, and N. Krasnogor'''
([https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Poster_2006_AHM_DanielBarthel.ppt PPT])
br
All Hands Meeting (AHM'06), Nottingham, UKbr

||2005|| * '''D. Barthel, J.D. Hirst, and N. Krasnogor'''
([https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Poster_2005_GrantholdersWorkshop_DanielBarthel.ppt PPT])
br
Similarity Comparison of Proteinsbr
Grantholders Workshop, Manchester, UK br

Presentations

||2007|| * '''D. Barthel '''
([https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Presentation_2007_RAD_DanielBarthel.ppt?format=raw PPT])br
Research Away Day (RAD'07), Nottingham, UK * '''D. Barthel '''
([https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Presentation_2007_ASAP_NGDS-Evaluation_DanielBarthel.ppt?format=raw PPT])br
ASAP, Next Generation Decision Support - EPSRC Evaluation, Nottingham, UK * '''D. Barthel '''
([https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Presentation_2007_ASAP_NGDS-Workshop1_DanielBarthel.ppt?format=raw PPT])br
ASAP, Next Generation Decision Support - Workshop 1, Nottingham, UK * '''D. Barthel '''
([https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Presentation_2007_ASAP_JournalClub_DanielBarthel.ppt?format=raw PPT])br
ASAP, Journal Club, Nottingham, UK * '''D. Barthel '''
([https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Presentation_2007_ASAP_DanielBarthel.ppt?format=raw PPT])br
ASAP, Group Seminar, Nottingham, UK * '''D. Barthel '''
([https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Presentation_2007_ASAP_CASP_DanielBarthel.ppt?format=raw PPT])br
ASAP, CASP Workshop, Nottingham, UK * '''D. Barthel '''
([https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Presentation_2006_CNIO_DanielBarthel.ppt?format=raw PPT])br
CNIO, Group Seminar, Madrid, Spain

||2006|| * '''D. Barthel '''
([https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Presentation_2006_EMPW_DanielBarthel.ppt?format=raw PPT])br
East Midlands Proteomics Workshop (EMPW'06), Nottingham, UK * '''D. Barthel '''
([https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Presentation_2006_RAD_DanielBarthel.ppt?format=raw PPT])br
Research Away Day (RAD'06), Nottingham, UK * '''D. Barthel '''
[https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Presentation_2006_ASAP_DanielBarthel.ppt?format=raw PPT])br
ASAP, Group Seminar, Nottingham, UK * '''D. Barthel '''
([https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Presentation_2006_ASAP_CASP_DanielBarthel.ppt?format=raw PPT])br
ASAP, CASP Workshop, Nottingham, UK * '''D. Barthel '''
([https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Presentation_2006_SchoolOfChemistry_DanielBarthel.ppt?format=raw PPT])br
School of Chemistry, Group Seminar, Nottingham, UK

Demonstrations

||2006|| * '''D. Barthel'''
(Part1: [https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Demonstration_2006_AHM_Part1_DanielBarthel.ppt?format=raw PPT], Part2: [https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Demonstration_2006_AHM_Part2_DanielBarthel.ppt?format=raw PPT])br
All Hands Meeting (AHM'06), Nottingham, UK '''&'''br
School of Chemistry, Group Seminar, Nottingham, UK

||2005|| * '''D. Barthel, N. Krasnogor'''br
Grantholders Workshop, Manchester, UK

Tutorials

||2006|| * '''D. Barthel'''
([https://psiren.cs.nott.ac.uk/projects/procksi/browser/Publications/Tutorial_2006_ASAP_ClusterAnalysis_DanielBarthel.ppt PPT])br
Cluster Analysis and Validationbr
ASAP, Journal Club, Nottingham, UK